Expression Predictor Quick Start Guide

1.1 Training/Testing Set Validation Over a Single Run

1. Double click on ExP.bat

2. Click on Project and select Load Data

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3. Select Input file

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4. Click Open

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5. Select the Training Set

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6. Click on the "Insert>>" button on the Training Set Panel

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7. Select the Testing Set

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8. Click on the "Insert>>" button on the Testing Set Panel

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9. Select a vigilance value from the slider

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10. Click on the "Submit button

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11. Click on the Prediction Tab to view the confusion matrix

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12. Click on one of the numbers in the confusion matrix to view the list of samples that corresponds the prediction in the selected cell from the matrix

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1.2 Training/Testing Set Validation over the Entire Vigilance Spectrum

1. Repeat steps 1 to 8 from Section 1.1

2. Click on the checkbox that says "Apply All Values in Vigilance Spectrum"

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3. Repeat steps 10 from Section 1.1
4. Click on Prediction Tab to view the prediction results using vigilance values from 0 to 1 with 0.01 increment at each cycle

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5. Click on "Save As Text (Tab delimited), enter the filename, and click Save.

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2.1 Leave One Out Cross Validation a Single Run

1. Repeat steps 1 to 4 from Section 1.1

2. Select Leave One Out Cross Validation

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3. Click on the Submit button

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4. Click on the Prediction Tab to view the confusion matrix

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5. Click on one of the numbers in the confusion matrix to view the list of samples that corresponds to the prediction in the selected cell from the matrix.

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2.2 Leave One Out Cross Validation over the Entire Vigilance Spectrum

1. Repeat steps 1 and 2 from Section 2.1

2. Click on the checkbox that says “Apply All Values in Vigilance Spectrum”

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3. Repeat steps 3 Section 2.1

4. Click on Prediction Tab to view the prediction results using vigilance values from 0 to 1 with 0.01 increment at each cycle

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5. Repeat step 5 from Section 1.2 to save prediction as tab-delimited text file.